HL_5AA0_055

3D structure

PDB id

5AA0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AA0_055 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.1967

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

5AA0|1|AA|C|2324||||P_1
5AA0|1|AA|G|2325||||P_1
5AA0|1|AA|C|2326||||P_1
5AA0|1|AA|A|2327||||P_1
5AA0|1|AA|A|2328||||P_1
5AA0|1|AA|G|2329||||P_1
5AA0|1|AA|G|2330||||P_1
5AA0|1|AA|G|2331||||P_1

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AX

50S ribosomal protein L27

Chain Ac

50S ribosomal protein L33

Chain BE

Transfer RNA; tRNA