HL_5AA0_069
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GGCGAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AA0_069 not in the Motif Atlas
- Homologous match to HL_7RQB_071
- Geometric discrepancy: 0.44
- The information below is about HL_7RQB_071
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_35490.2
- Basepair signature
- cWW-tSH-F-F
- Number of instances in this motif group
- 299
Unit IDs
5AA0|1|AB|G|86||||P_1
5AA0|1|AB|G|87||||P_1
5AA0|1|AB|C|88||||P_1
5AA0|1|AB|G|89||||P_1
5AA0|1|AB|A|89|||A|P_1
5AA0|1|AB|C|90||||P_1
Current chains
- Chain AB
- 5S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AN
- 50S ribosomal protein L16
- Chain AW
- 50S ribosomal protein L25
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