HL_5AA0_076
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- UGAGAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AA0_076 not in the Motif Atlas
- Homologous match to HL_4LFB_007
- Geometric discrepancy: 0.2397
- The information below is about HL_4LFB_007
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.7
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 349
Unit IDs
5AA0|1|BA|U|296||||P_1
5AA0|1|BA|G|297||||P_1
5AA0|1|BA|A|298||||P_1
5AA0|1|BA|G|299||||P_1
5AA0|1|BA|A|300||||P_1
5AA0|1|BA|G|301||||P_1
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BH
- 30S ribosomal protein S4
- Chain BI
- 30S ribosomal protein S5
- Chain BP
- 30S ribosomal protein S12
- Chain BU
- 30S ribosomal protein S17
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