HL_5AA0_099
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GAUCAGCCAUGC
- Length
- 12 nucleotides
- Bulged bases
- 5AA0|1|BA|U|1364||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AA0_099 not in the Motif Atlas
- Homologous match to HL_6CZR_101
- Geometric discrepancy: 0.3327
- The information below is about HL_6CZR_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5AA0|1|BA|G|1356||||P_1
5AA0|1|BA|A|1357||||P_1
5AA0|1|BA|U|1358||||P_1
5AA0|1|BA|C|1359||||P_1
5AA0|1|BA|A|1360||||P_1
5AA0|1|BA|G|1361||||P_1
5AA0|1|BA|C|1362||||P_1
5AA0|1|BA|C|1362|||A|P_1
5AA0|1|BA|A|1363||||P_1
5AA0|1|BA|U|1364||||P_1
5AA0|1|BA|G|1365||||P_1
5AA0|1|BA|C|1366||||P_1
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BM
- 30S ribosomal protein S9
- Chain BN
- 30S ribosomal protein S10
- Chain BQ
- 30S ribosomal protein S13
- Chain BR
- 30S ribosomal protein S14 type Z
- Chain BW
- 30S ribosomal protein S19
- Chain BY
- 30S ribosomal protein Thx
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