HL_5AA0_107
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GUUCGAUUC
- Length
- 9 nucleotides
- Bulged bases
- 5AA0|1|BD|C|56||||P_1, 5AA0|1|BD|G|57||||P_1
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AA0_107 not in the Motif Atlas
- Homologous match to HL_3WFS_003
- Geometric discrepancy: 0.2552
- The information below is about HL_3WFS_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
5AA0|1|BD|G|53||||P_1
5AA0|1|BD|U|54||||P_1
5AA0|1|BD|U|55||||P_1
5AA0|1|BD|C|56||||P_1
5AA0|1|BD|G|57||||P_1
5AA0|1|BD|A|58||||P_1
5AA0|1|BD|U|59||||P_1
5AA0|1|BD|U|60||||P_1
5AA0|1|BD|C|61||||P_1
Current chains
- Chain BD
- tRNA chain 2
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AN
- 50S ribosomal protein L16
- Chain AW
- 50S ribosomal protein L25
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