HL_5AA0_108

3D structure

PDB id

5AA0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

5AA0|1|BE|C|17||||P_1, 5AA0|1|BE|G|18||||P_1, 5AA0|1|BE|G|19||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AA0_108 not in the Motif Atlas

Homologous match to HL_5AXM_001

Geometric discrepancy: 0.2674

The information below is about HL_5AXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

5AA0|1|BE|C|13||||P_1
5AA0|1|BE|A|14||||P_1
5AA0|1|BE|G|15||||P_1
5AA0|1|BE|U|16||||P_1
5AA0|1|BE|C|17||||P_1
5AA0|1|BE|G|18||||P_1
5AA0|1|BE|G|19||||P_1
5AA0|1|BE|U|20||||P_1
5AA0|1|BE|A|21||||P_1
5AA0|1|BE|G|22||||P_1

Current chains

Chain BE

tRNA chain 2

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AG

50S ribosomal protein L5