HL_5AA0_116
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- UUCCCAUUCCGAACA
- Length
- 15 nucleotides
- Bulged bases
- 5AA0|1|AB|U|41||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AA0_116 not in the Motif Atlas
- Homologous match to HL_5J7L_215
- Geometric discrepancy: 0.2744
- The information below is about HL_5J7L_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5AA0|1|AB|U|34||||P_1
5AA0|1|AB|U|35||||P_1
5AA0|1|AB|C|36||||P_1
5AA0|1|AB|C|37||||P_1
5AA0|1|AB|C|38||||P_1
5AA0|1|AB|A|39||||P_1
5AA0|1|AB|U|40||||P_1
5AA0|1|AB|U|41||||P_1
5AA0|1|AB|C|42||||P_1
5AA0|1|AB|C|43||||P_1
5AA0|1|AB|G|44||||P_1
5AA0|1|AB|A|45||||P_1
5AA0|1|AB|A|46||||P_1
5AA0|1|AB|C|47||||P_1
5AA0|1|AB|A|48||||P_1
Current chains
- Chain AB
- 5S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AG
- 50S ribosomal protein L5
- Chain AP
- 50S ribosomal protein L18
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