HL_5ADY_006

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

5ADY|1|B|U|139

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ADY_006 not in the Motif Atlas

Geometric match to HL_5J7L_009

Geometric discrepancy: 0.2625

The information below is about HL_5J7L_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5ADY|1|B|U|137
5ADY|1|B|U|138
5ADY|1|B|U|139
5ADY|1|B|C|140
5ADY|1|B|G|141
5ADY|1|B|A|142

Current chains

Chain B

23S RRNA

Nearby chains

Chain T

50S RIBOSOMAL PROTEIN L23