HL_5ADY_013

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

5ADY|1|B|G|329, 5ADY|1|B|A|330, 5ADY|1|B|C|331

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ADY_013 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.2466

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

5ADY|1|B|G|327
5ADY|1|B|U|328
5ADY|1|B|G|329
5ADY|1|B|A|330
5ADY|1|B|C|331
5ADY|1|B|A|332
5ADY|1|B|G|333
5ADY|1|B|C|334
5ADY|1|B|C|335

Current chains

Chain B

23S RRNA

Nearby chains

Chain E

50S RIBOSOMAL PROTEIN L4

Chain U

50S RIBOSOMAL PROTEIN L24