HL_5ADY_030

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ADY_030 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.3976

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5ADY|1|B|C|1064
5ADY|1|B|U|1065
5ADY|1|B|U|1066
5ADY|1|B|A|1067
5ADY|1|B|G|1068
5ADY|1|B|A|1069
5ADY|1|B|A|1070
5ADY|1|B|G|1071
5ADY|1|B|C|1072
5ADY|1|B|A|1073
5ADY|1|B|G|1074

Current chains

Chain B

23S RRNA

Nearby chains

Chain 6

GTPASE HFLX

Chain I

50S RIBOSOMAL PROTEIN L11