HL_5ADY_043

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UAGAGAAUA

Length

9 nucleotides

Bulged bases

5ADY|1|B|A|1634

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ADY_043 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.4914

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5ADY|1|B|U|1629
5ADY|1|B|A|1630
5ADY|1|B|G|1631
5ADY|1|B|A|1632
5ADY|1|B|G|1633
5ADY|1|B|A|1634
5ADY|1|B|A|1635
5ADY|1|B|U|1636
5ADY|1|B|A|1637

Current chains

Chain B

23S RRNA

Nearby chains