HL_5ADY_059

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUGACGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5ADY_059 not in the Motif Atlas

Homologous match to HL_7A0S_056

Geometric discrepancy: 0.3094

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5ADY|1|B|G|2355
5ADY|1|B|U|2356
5ADY|1|B|G|2357
5ADY|1|B|A|2358
5ADY|1|B|C|2359
5ADY|1|B|G|2360
5ADY|1|B|G|2361
5ADY|1|B|C|2362

Current chains

Chain B

23S RRNA

Nearby chains

Chain 3

50S RIBOSOMAL PROTEIN L35

Chain L

50S RIBOSOMAL PROTEIN L15

Chain W

50S RIBOSOMAL PROTEIN L27