HL_5AFI_034
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCGACGGUUGUC
- Length
- 12 nucleotides
- Bulged bases
- 5AFI|1|A|A|1453||||P_1, 5AFI|1|A|C|1454||||P_1, 5AFI|1|A|U|1460||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AFI_034 not in the Motif Atlas
- Geometric match to HL_5J7L_018
- Geometric discrepancy: 0.1887
- The information below is about HL_5J7L_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_37344.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
5AFI|1|A|G|1450||||P_1
5AFI|1|A|C|1451||||P_1
5AFI|1|A|G|1452||||P_1
5AFI|1|A|A|1453||||P_1
5AFI|1|A|C|1454||||P_1
5AFI|1|A|G|1455||||P_1
5AFI|1|A|G|1456||||P_1
5AFI|1|A|U|1457||||P_1
5AFI|1|A|U|1458||||P_1
5AFI|1|A|G|1459||||P_1
5AFI|1|A|U|1460||||P_1
5AFI|1|A|C|1461||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain N
- 50S ribosomal protein L17
Coloring options: