HL_5AFI_048
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUG(6MZ)AGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 5AFI|1|A|A|2031||||P_1, 5AFI|1|A|G|2032||||P_1
- QA status
- Modified nucleotides: 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AFI_048 not in the Motif Atlas
- Homologous match to HL_5J7L_183
- Geometric discrepancy: 0.1032
- The information below is about HL_5J7L_183
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_61996.3
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5AFI|1|A|G|2027||||P_1
5AFI|1|A|U|2028||||P_1
5AFI|1|A|G|2029||||P_1
5AFI|1|A|6MZ|2030||||P_1
5AFI|1|A|A|2031||||P_1
5AFI|1|A|G|2032||||P_1
5AFI|1|A|A|2033||||P_1
5AFI|1|A|U|2034||||P_1
5AFI|1|A|G|2035||||P_1
5AFI|1|A|C|2036||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain D
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L13
- Chain R
- 50S ribosomal protein L21
Coloring options: