HL_5AFI_058
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGUUCAUAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AFI_058 not in the Motif Atlas
- Homologous match to HL_4WF9_056
- Geometric discrepancy: 0.1273
- The information below is about HL_4WF9_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_32735.2
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5AFI|1|A|A|2471||||P_1
5AFI|1|A|G|2472||||P_1
5AFI|1|A|U|2473||||P_1
5AFI|1|A|U|2474||||P_1
5AFI|1|A|C|2475||||P_1
5AFI|1|A|A|2476||||P_1
5AFI|1|A|U|2477||||P_1
5AFI|1|A|A|2478||||P_1
5AFI|1|A|U|2479||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain G
- 50S ribosomal protein L6
- Chain y
- Transfer RNA; tRNA
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