HL_5AFI_109
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- G(5MU)(PSU)CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AFI_109 not in the Motif Atlas
- Homologous match to HL_5L4O_003
- Geometric discrepancy: 0.1813
- The information below is about HL_5L4O_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
5AFI|1|y|G|53||||P_1
5AFI|1|y|5MU|54||||P_1
5AFI|1|y|PSU|55||||P_1
5AFI|1|y|C|56||||P_1
5AFI|1|y|G|57||||P_1
5AFI|1|y|A|58||||P_1
5AFI|1|y|U|59||||P_1
5AFI|1|y|U|60||||P_1
5AFI|1|y|C|61||||P_1
Current chains
- Chain y
- A/T-site Phe-tRNAPhe
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- 50S ribosomal protein L6
- Chain I
- 50S ribosomal protein L11
- Chain z
- Elongation factor Tu 2
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