HL_5AJ3_022

3D structure

PDB id

5AJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the small subunit of the mammalian mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGGAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ3_022 not in the Motif Atlas

Homologous match to HL_4LFB_032

Geometric discrepancy: 0.16

The information below is about HL_4LFB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

5AJ3|1|A|U|941
5AJ3|1|A|G|942
5AJ3|1|A|G|943
5AJ3|1|A|A|944
5AJ3|1|A|A|945
5AJ3|1|A|A|946

Current chains

Chain A

MITORIBOSOMAL 12S RRNA

Nearby chains

Chain n

MITORIBOSOMAL PROTEIN MS38, MRPS38