HL_5AJ4_001

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUGGUCCUGG

Length

11 nucleotides

Bulged bases

5AJ4|1|AA|U|10

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_001 not in the Motif Atlas

Homologous match to HL_4LFB_001

Geometric discrepancy: 0.1246

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.2

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5AJ4|1|AA|U|8
5AJ4|1|AA|U|9
5AJ4|1|AA|U|10
5AJ4|1|AA|G|11
5AJ4|1|AA|G|12
5AJ4|1|AA|U|13
5AJ4|1|AA|C|14
5AJ4|1|AA|C|15
5AJ4|1|AA|U|16
5AJ4|1|AA|G|17
5AJ4|1|AA|G|18

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AE

MITORIBOSOMAL PROTEIN US5M, MRPS5

Chain AX

MRNA