HL_5AJ4_002

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAUCCG

Length

6 nucleotides

Bulged bases

5AJ4|1|AA|U|58

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_002 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.3009

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

5AJ4|1|AA|U|56
5AJ4|1|AA|A|57
5AJ4|1|AA|U|58
5AJ4|1|AA|C|59
5AJ4|1|AA|C|60
5AJ4|1|AA|G|61

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain Ad

MITORIBOSOMAL PROTEIN MS26, MRPS26

Chain Aj

MITORIBOSOMAL PROTEIN MS34, MRPS34

Chain Ap

28S RIBOSOMAL PROTEIN S18B, MITOCHONDRIAL