HL_5AJ4_005

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

5AJ4|1|AA|U|149, 5AJ4|1|AA|A|151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_005 not in the Motif Atlas

Geometric match to HL_5J7L_018

Geometric discrepancy: 0.2703

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

5AJ4|1|AA|G|147
5AJ4|1|AA|C|148
5AJ4|1|AA|U|149
5AJ4|1|AA|C|150
5AJ4|1|AA|A|151
5AJ4|1|AA|A|152
5AJ4|1|AA|C|153

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AP

MITORIBOSOMAL PROTEIN BS16M, MRPS16

Chain Ac

MITORIBOSOMAL PROTEIN MS25, MRPS25