HL_5AJ4_007

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_007 not in the Motif Atlas

Homologous match to HL_4LFB_010

Geometric discrepancy: 0.2244

The information below is about HL_4LFB_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

5AJ4|1|AA|C|198
5AJ4|1|AA|G|199
5AJ4|1|AA|A|200
5AJ4|1|AA|A|201
5AJ4|1|AA|A|202
5AJ4|1|AA|G|203

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AP

MITORIBOSOMAL PROTEIN BS16M, MRPS16

Chain Ad

MITORIBOSOMAL PROTEIN MS26, MRPS26

Chain Aj

MITORIBOSOMAL PROTEIN MS34, MRPS34

Chain Ap

28S RIBOSOMAL PROTEIN S18B, MITOCHONDRIAL