HL_5AJ4_010

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_010 not in the Motif Atlas

Homologous match to HL_4LFB_016

Geometric discrepancy: 0.1309

The information below is about HL_4LFB_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

5AJ4|1|AA|C|376
5AJ4|1|AA|G|377
5AJ4|1|AA|A|378
5AJ4|1|AA|A|379
5AJ4|1|AA|A|380
5AJ4|1|AA|G|381

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AO

MITORIBOSOMAL PROTEIN US15M, MRPS15

Chain AU

MITORIBOSOMAL PROTEIN BS21M, MRPS21

Chain Am

MITORIBOSOMAL PROTEIN MS37, MRPS37