HL_5AJ4_012
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUACAUAACAAAA
- Length
- 13 nucleotides
- Bulged bases
- 5AJ4|1|AA|U|471, 5AJ4|1|AA|A|476
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AJ4_012 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.3672
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5AJ4|1|AA|U|466
5AJ4|1|AA|U|467
5AJ4|1|AA|A|468
5AJ4|1|AA|C|469
5AJ4|1|AA|A|470
5AJ4|1|AA|U|471
5AJ4|1|AA|A|472
5AJ4|1|AA|A|473
5AJ4|1|AA|C|474
5AJ4|1|AA|A|475
5AJ4|1|AA|A|476
5AJ4|1|AA|A|477
5AJ4|1|AA|A|478
Current chains
- Chain AA
- MITORIBOSOMAL 12S Ribosomal RNA
Nearby chains
- Chain AB
- MITORIBOSOMAL PROTEIN US2M, MRPS2
- Chain AE
- MITORIBOSOMAL PROTEIN US5M, MRPS5
- Chain AF
- MITORIBOSOMAL PROTEIN BS6M, MRPS6
- Chain Ab
- MITORIBOSOMAL PROTEIN MS23, MRPS23
- Chain Am
- MITORIBOSOMAL PROTEIN MS37, MRPS37
- Chain An
- MITORIBOSOMAL PROTEIN MS38, MRPS38
Coloring options: