HL_5AJ4_013

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAACUG

Length

6 nucleotides

Bulged bases

5AJ4|1|AA|A|502, 5AJ4|1|AA|U|505

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_013 not in the Motif Atlas

Geometric match to HL_4ZLD_001

Geometric discrepancy: 0.1462

The information below is about HL_4ZLD_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

5AJ4|1|AA|C|501
5AJ4|1|AA|A|502
5AJ4|1|AA|A|503
5AJ4|1|AA|C|504
5AJ4|1|AA|U|505
5AJ4|1|AA|G|506

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AO

MITORIBOSOMAL PROTEIN US15M, MRPS15

Chain An

MITORIBOSOMAL PROTEIN MS38, MRPS38

Chain BA

Large subunit ribosomal RNA; LSU rRNA