HL_5AJ4_016
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UAAAAA
- Length
- 6 nucleotides
- Bulged bases
- 5AJ4|1|AA|A|637, 5AJ4|1|AA|A|640
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AJ4_016 not in the Motif Atlas
- Geometric match to HL_5AH5_007
- Geometric discrepancy: 0.1812
- The information below is about HL_5AH5_007
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_90436.4
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 48
Unit IDs
5AJ4|1|AA|U|636
5AJ4|1|AA|A|637
5AJ4|1|AA|A|638
5AJ4|1|AA|A|639
5AJ4|1|AA|A|640
5AJ4|1|AA|A|641
Current chains
- Chain AA
- MITORIBOSOMAL 12S Ribosomal RNA
Nearby chains
- Chain AB
- MITORIBOSOMAL PROTEIN US2M, MRPS2
- Chain AE
- MITORIBOSOMAL PROTEIN US5M, MRPS5
- Chain AF
- MITORIBOSOMAL PROTEIN BS6M, MRPS6
- Chain Ab
- MITORIBOSOMAL PROTEIN MS23, MRPS23
- Chain Am
- MITORIBOSOMAL PROTEIN MS37, MRPS37
Coloring options: