HL_5AJ4_018

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UACAUAA

Length

7 nucleotides

Bulged bases

5AJ4|1|AA|U|732, 5AJ4|1|AA|A|733

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_018 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.1724

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5AJ4|1|AA|U|728
5AJ4|1|AA|A|729
5AJ4|1|AA|C|730
5AJ4|1|AA|A|731
5AJ4|1|AA|U|732
5AJ4|1|AA|A|733
5AJ4|1|AA|A|734

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AG

MITORIBOSOMAL PROTEIN US7M, MRPS7

Chain AI

MITORIBOSOMAL PROTEIN US9M, MRPS9

Chain Ag

MITORIBOSOMAL PROTEIN MS29, MRPS29