HL_5AJ4_020
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAAUAGAGUGC
- Length
- 11 nucleotides
- Bulged bases
- 5AJ4|1|AA|U|808
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AJ4_020 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.3357
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.2
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5AJ4|1|AA|G|800
5AJ4|1|AA|A|801
5AJ4|1|AA|A|802
5AJ4|1|AA|U|803
5AJ4|1|AA|A|804
5AJ4|1|AA|G|805
5AJ4|1|AA|A|806
5AJ4|1|AA|G|807
5AJ4|1|AA|U|808
5AJ4|1|AA|G|809
5AJ4|1|AA|C|810
Current chains
- Chain AA
- MITORIBOSOMAL 12S Ribosomal RNA
Nearby chains
- Chain AI
- MITORIBOSOMAL PROTEIN US9M, MRPS9
- Chain AJ
- MITORIBOSOMAL PROTEIN US10M, MRPS10
- Chain AN
- MITORIBOSOMAL PROTEIN US14M, MRPS14
- Chain Ai
- MITORIBOSOMAL PROTEIN MS33, MRPS33
Coloring options: