HL_5AJ4_022

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGGAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_022 not in the Motif Atlas

Homologous match to HL_4LFB_032

Geometric discrepancy: 0.1906

The information below is about HL_4LFB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

5AJ4|1|AA|U|941
5AJ4|1|AA|G|942
5AJ4|1|AA|G|943
5AJ4|1|AA|A|944
5AJ4|1|AA|A|945
5AJ4|1|AA|A|946

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain An

MITORIBOSOMAL PROTEIN MS38, MRPS38

Chain BA

Large subunit ribosomal RNA; LSU rRNA