HL_5AJ4_023
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGGAGAU
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AJ4_023 not in the Motif Atlas
- Geometric match to HL_5J7L_141
- Geometric discrepancy: 0.1156
- The information below is about HL_5J7L_141
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_37369.2
- Basepair signature
- cWW-tSH-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
5AJ4|1|BA|A|80
5AJ4|1|BA|G|81
5AJ4|1|BA|G|82
5AJ4|1|BA|A|83
5AJ4|1|BA|G|84
5AJ4|1|BA|A|85
5AJ4|1|BA|U|86
Current chains
- Chain BA
- MITORIBOSOMAL 16S Ribosomal RNA
Nearby chains
- Chain B1
- MITORIBOSOMAL PROTEIN BL28M, MRPL28
- Chain B8
- MITORIBOSOMAL PROTEIN BL35M, MRPL35
- Chain BI
- MITORIBOSOMAL PROTEIN BL9M, MRPL9
- Chain BP
- MITORIBOSOMAL PROTEIN UL15M, MRPL15
- Chain Bn
- MITORIBOSOMAL PROTEIN ML51, MRPL51
Coloring options: