HL_5AJ4_024

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_024 not in the Motif Atlas

Homologous match to HL_7RQB_015

Geometric discrepancy: 0.1206

The information below is about HL_7RQB_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

5AJ4|1|BA|C|121
5AJ4|1|BA|G|122
5AJ4|1|BA|U|123
5AJ4|1|BA|A|124
5AJ4|1|BA|A|125
5AJ4|1|BA|G|126

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain B7

MITORIBOSOMAL PROTEIN BL34M, MRPL34

Chain BF

MITORIBOSOMAL PROTEIN UL4M, MRPL4

Chain Be

MITORIBOSOMAL PROTEIN ML41, MRPL41