HL_5AJ4_026

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUUGCAUAA

Length

10 nucleotides

Bulged bases

5AJ4|1|BA|A|190

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_026 not in the Motif Atlas

Geometric match to HL_5J7L_150

Geometric discrepancy: 0.1193

The information below is about HL_5J7L_150

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

5AJ4|1|BA|U|182
5AJ4|1|BA|U|183
5AJ4|1|BA|U|184
5AJ4|1|BA|U|185
5AJ4|1|BA|G|186
5AJ4|1|BA|C|187
5AJ4|1|BA|A|188
5AJ4|1|BA|U|189
5AJ4|1|BA|A|190
5AJ4|1|BA|A|191

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain B5

MITORIBOSOMAL PROTEIN BL32M, MRPL32

Chain BE

MITORIBOSOMAL PROTEIN UL3M, MRPL3

Chain BP

MITORIBOSOMAL PROTEIN UL15M, MRPL15

Chain BV

MITORIBOSOMAL PROTEIN BL21M, MRPL21