HL_5AJ4_027
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAGAAC
- Length
- 6 nucleotides
- Bulged bases
- 5AJ4|1|BA|G|221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AJ4_027 not in the Motif Atlas
- Geometric match to HL_7A0S_011
- Geometric discrepancy: 0.1949
- The information below is about HL_7A0S_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.9
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
5AJ4|1|BA|G|219
5AJ4|1|BA|A|220
5AJ4|1|BA|G|221
5AJ4|1|BA|A|222
5AJ4|1|BA|A|223
5AJ4|1|BA|C|224
Current chains
- Chain BA
- MITORIBOSOMAL 16S Ribosomal RNA
Nearby chains
- Chain B8
- MITORIBOSOMAL PROTEIN BL35M, MRPL35
- Chain BF
- MITORIBOSOMAL PROTEIN UL4M, MRPL4
- Chain BP
- MITORIBOSOMAL PROTEIN UL15M, MRPL15
- Chain Bl
- MITORIBOSOMAL PROTEIN ML49, MRPL49
- Chain Bn
- MITORIBOSOMAL PROTEIN ML51, MRPL51
- Chain Bv
- MITORIBOSOMAL PROTEIN ML64, MRPL59
Coloring options: