HL_5AJ4_028

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUAAAAGAA

Length

10 nucleotides

Bulged bases

5AJ4|1|BA|A|273, 5AJ4|1|BA|G|275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_028 not in the Motif Atlas

Homologous match to HL_5J7L_154

Geometric discrepancy: 0.4004

The information below is about HL_5J7L_154

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5AJ4|1|BA|U|268
5AJ4|1|BA|U|269
5AJ4|1|BA|U|270
5AJ4|1|BA|A|271
5AJ4|1|BA|A|272
5AJ4|1|BA|A|273
5AJ4|1|BA|A|274
5AJ4|1|BA|G|275
5AJ4|1|BA|A|276
5AJ4|1|BA|A|277

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain An

MITORIBOSOMAL PROTEIN MS38, MRPS38

Chain BD

MITORIBOSOMAL PROTEIN UL2M, MRPL2

Chain Ba

MITORIBOSOMAL PROTEIN ML37, MRPL37