HL_5AJ4_030

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

5AJ4|1|BA|A|327

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_030 not in the Motif Atlas

Homologous match to HL_7RQB_024

Geometric discrepancy: 0.2584

The information below is about HL_7RQB_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74322.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

4

Unit IDs

5AJ4|1|BA|U|325
5AJ4|1|BA|G|326
5AJ4|1|BA|A|327
5AJ4|1|BA|A|328
5AJ4|1|BA|A|329
5AJ4|1|BA|A|330
5AJ4|1|BA|G|331

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain BD

MITORIBOSOMAL PROTEIN UL2M, MRPL2