HL_5AJ4_031

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUUAG

Length

6 nucleotides

Bulged bases

5AJ4|1|BA|U|372, 5AJ4|1|BA|A|375

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_031 not in the Motif Atlas

Homologous match to HL_4WF9_025

Geometric discrepancy: 0.2023

The information below is about HL_4WF9_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.2

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

5AJ4|1|BA|U|371
5AJ4|1|BA|U|372
5AJ4|1|BA|U|373
5AJ4|1|BA|U|374
5AJ4|1|BA|A|375
5AJ4|1|BA|G|376

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain BP

MITORIBOSOMAL PROTEIN UL15M, MRPL15