HL_5AJ4_034
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAUACAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AJ4_034 not in the Motif Atlas
- Homologous match to HL_5J7L_160
- Geometric discrepancy: 0.1949
- The information below is about HL_5J7L_160
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_42998.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5AJ4|1|BA|G|461
5AJ4|1|BA|A|462
5AJ4|1|BA|U|463
5AJ4|1|BA|A|464
5AJ4|1|BA|C|465
5AJ4|1|BA|A|466
5AJ4|1|BA|A|467
5AJ4|1|BA|C|468
Current chains
- Chain BA
- MITORIBOSOMAL 16S Ribosomal RNA
Nearby chains
- Chain B3
- MITORIBOSOMAL PROTEIN UL30M, MRPL30
- Chain BJ
- MITORIBOSOMAL PROTEIN UL10M, MRPL10
- Chain BQ
- MITORIBOSOMAL PROTEIN UL16M, MRPL16
- Chain BU
- MITORIBOSOMAL PROTEIN BL20M, MRPL20
- Chain BV
- MITORIBOSOMAL PROTEIN BL21M, MRPL21
- Chain Bt
- MITORIBOSOMAL PROTEIN ML63, MRPL57
- Chain Bx
- MITORIBOSOMAL PROTEIN ML66, MRPS18A
Coloring options: