HL_5AJ4_035

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUAAAAGCAG

Length

11 nucleotides

Bulged bases

5AJ4|1|BA|A|513

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_035 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.2124

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5AJ4|1|BA|C|507
5AJ4|1|BA|C|508
5AJ4|1|BA|U|509
5AJ4|1|BA|A|510
5AJ4|1|BA|A|511
5AJ4|1|BA|A|512
5AJ4|1|BA|A|513
5AJ4|1|BA|G|514
5AJ4|1|BA|C|515
5AJ4|1|BA|A|516
5AJ4|1|BA|G|517

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain BK

MITORIBOSOMAL PROTEIN UL11M, MRPL11

Chain BQ

MITORIBOSOMAL PROTEIN UL16M, MRPL16

Chain Bz

UNASSIGNED SECONDARY STRUCTURE ELEMENTS