HL_5AJ4_037
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUGAAACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AJ4_037 not in the Motif Atlas
- Geometric match to HL_1FIR_001
- Geometric discrepancy: 0.3551
- The information below is about HL_1FIR_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 18
Unit IDs
5AJ4|1|BA|U|611
5AJ4|1|BA|U|612
5AJ4|1|BA|G|613
5AJ4|1|BA|A|614
5AJ4|1|BA|A|615
5AJ4|1|BA|A|616
5AJ4|1|BA|C|617
5AJ4|1|BA|A|618
Current chains
- Chain BA
- MITORIBOSOMAL 16S Ribosomal RNA
Nearby chains
- Chain BF
- MITORIBOSOMAL PROTEIN UL4M, MRPL4
- Chain BP
- MITORIBOSOMAL PROTEIN UL15M, MRPL15
- Chain Bg
- MITORIBOSOMAL PROTEIN ML43, MRPL43
- Chain Bh
- MITORIBOSOMAL PROTEIN ML44, MRPL44
- Chain Bm
- MITORIBOSOMAL PROTEIN ML50, MRPL50
- Chain Bn
- MITORIBOSOMAL PROTEIN ML51, MRPL51
- Chain Bt
- MITORIBOSOMAL PROTEIN ML63, MRPL57
Coloring options: