HL_5AJ4_041

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAACACAG

Length

8 nucleotides

Bulged bases

5AJ4|1|BA|A|760, 5AJ4|1|BA|A|762, 5AJ4|1|BA|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_041 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.116

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5AJ4|1|BA|C|758
5AJ4|1|BA|A|759
5AJ4|1|BA|A|760
5AJ4|1|BA|C|761
5AJ4|1|BA|A|762
5AJ4|1|BA|C|763
5AJ4|1|BA|A|764
5AJ4|1|BA|G|765

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain B7

MITORIBOSOMAL PROTEIN BL34M, MRPL34

Chain BW

MITORIBOSOMAL PROTEIN UL22M, MRPL22

Chain Be

MITORIBOSOMAL PROTEIN ML41, MRPL41