HL_5AJ4_043

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGCAUUACUAGUAUU

Length

15 nucleotides

Bulged bases

5AJ4|1|BA|A|851, 5AJ4|1|BA|U|852, 5AJ4|1|BA|U|853, 5AJ4|1|BA|A|857, 5AJ4|1|BA|U|861

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ4|1|BA|A|848
5AJ4|1|BA|G|849
5AJ4|1|BA|C|850
5AJ4|1|BA|A|851
5AJ4|1|BA|U|852
5AJ4|1|BA|U|853
5AJ4|1|BA|A|854
5AJ4|1|BA|C|855
5AJ4|1|BA|U|856
5AJ4|1|BA|A|857
5AJ4|1|BA|G|858
5AJ4|1|BA|U|859
5AJ4|1|BA|A|860
5AJ4|1|BA|U|861
5AJ4|1|BA|U|862

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

MITORIBOSOMAL PROTEIN UL2M, MRPL2

Chain Ba

MITORIBOSOMAL PROTEIN ML37, MRPL37