HL_5AJ4_047
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGAAGAGGC
- Length
- 10 nucleotides
- Bulged bases
- 5AJ4|1|BA|A|1023, 5AJ4|1|BA|A|1024, 5AJ4|1|BA|G|1025
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AJ4_047 not in the Motif Atlas
- Homologous match to HL_4WF9_047
- Geometric discrepancy: 0.1444
- The information below is about HL_4WF9_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.2
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
5AJ4|1|BA|G|1020
5AJ4|1|BA|U|1021
5AJ4|1|BA|G|1022
5AJ4|1|BA|A|1023
5AJ4|1|BA|A|1024
5AJ4|1|BA|G|1025
5AJ4|1|BA|A|1026
5AJ4|1|BA|G|1027
5AJ4|1|BA|G|1028
5AJ4|1|BA|C|1029
Current chains
- Chain BA
- MITORIBOSOMAL 16S Ribosomal RNA
Nearby chains
- Chain B5
- MITORIBOSOMAL PROTEIN BL32M, MRPL32
- Chain BE
- MITORIBOSOMAL PROTEIN UL3M, MRPL3
- Chain BV
- MITORIBOSOMAL PROTEIN BL21M, MRPL21
- Chain Bt
- MITORIBOSOMAL PROTEIN ML63, MRPL57
- Chain Bx
- MITORIBOSOMAL PROTEIN ML66, MRPS18A
Coloring options: