HL_5AJ4_048

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGUUCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_048 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2477

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

5AJ4|1|BA|A|1086
5AJ4|1|BA|G|1087
5AJ4|1|BA|U|1088
5AJ4|1|BA|U|1089
5AJ4|1|BA|C|1122
5AJ4|1|BA|U|1123

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain B1

MITORIBOSOMAL PROTEIN BL28M, MRPL28

Chain BI

MITORIBOSOMAL PROTEIN BL9M, MRPL9