HL_5AJ4_049

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUGGGGUGA

Length

9 nucleotides

Bulged bases

5AJ4|1|BA|G|1148

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_049 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1027

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

5AJ4|1|BA|U|1146
5AJ4|1|BA|U|1147
5AJ4|1|BA|G|1148
5AJ4|1|BA|G|1149
5AJ4|1|BA|G|1150
5AJ4|1|BA|G|1151
5AJ4|1|BA|U|1152
5AJ4|1|BA|G|1153
5AJ4|1|BA|A|1154

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain AV

P-SITE AND A-SITE TRNA

Chain B0

MITORIBOSOMAL PROTEIN BL27M, MRPL27

Chain BQ

MITORIBOSOMAL PROTEIN UL16M, MRPL16