HL_5AJ4_050

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUACAAAAAACCC

Length

13 nucleotides

Bulged bases

5AJ4|1|BA|C|1165, 5AJ4|1|BA|A|1166, 5AJ4|1|BA|C|1173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ4|1|BA|G|1162
5AJ4|1|BA|U|1163
5AJ4|1|BA|A|1164
5AJ4|1|BA|C|1165
5AJ4|1|BA|A|1166
5AJ4|1|BA|A|1167
5AJ4|1|BA|A|1168
5AJ4|1|BA|A|1169
5AJ4|1|BA|A|1170
5AJ4|1|BA|A|1171
5AJ4|1|BA|C|1172
5AJ4|1|BA|C|1173
5AJ4|1|BA|C|1174

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain B0

MITORIBOSOMAL PROTEIN BL27M, MRPL27

Chain B3

MITORIBOSOMAL PROTEIN UL30M, MRPL30

Chain BQ

MITORIBOSOMAL PROTEIN UL16M, MRPL16

Chain Bb

MITORIBOSOMAL PROTEIN ML38, MRPL38

Chain Bk

MITORIBOSOMAL PROTEIN ML48, MRPL48