HL_5AJ4_052
3D structure
- PDB id
- 5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 55S mammalian mitoribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAAACCAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AJ4_052 not in the Motif Atlas
- Geometric match to HL_4WF9_053
- Geometric discrepancy: 0.1614
- The information below is about HL_4WF9_053
- Detailed Annotation
- GNRA with extra cWW
- Broad Annotation
- GNRA with extra cWW
- Motif group
- HL_87268.3
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
5AJ4|1|BA|C|1196
5AJ4|1|BA|A|1197
5AJ4|1|BA|A|1198
5AJ4|1|BA|A|1199
5AJ4|1|BA|C|1200
5AJ4|1|BA|C|1201
5AJ4|1|BA|A|1202
5AJ4|1|BA|G|1203
Current chains
- Chain BA
- MITORIBOSOMAL 16S Ribosomal RNA
Nearby chains
- Chain B0
- MITORIBOSOMAL PROTEIN BL27M, MRPL27
- Chain B8
- MITORIBOSOMAL PROTEIN BL35M, MRPL35
- Chain BP
- MITORIBOSOMAL PROTEIN UL15M, MRPL15
- Chain Bb
- MITORIBOSOMAL PROTEIN ML38, MRPL38
Coloring options: