HL_5AJ4_053

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAAUUU

Length

6 nucleotides

Bulged bases

5AJ4|1|BA|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_053 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.3125

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5AJ4|1|BA|A|1236
5AJ4|1|BA|A|1237
5AJ4|1|BA|A|1238
5AJ4|1|BA|U|1239
5AJ4|1|BA|U|1240
5AJ4|1|BA|U|1241

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain B6

MITORIBOSOMAL PROTEIN BL33M, MRPL33

Chain B8

MITORIBOSOMAL PROTEIN BL35M, MRPL35

Chain Bv

MITORIBOSOMAL PROTEIN ML64, MRPL59