HL_5AJ4_054

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGUUCCUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_054 not in the Motif Atlas

Homologous match to HL_5J7L_193

Geometric discrepancy: 0.1459

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5AJ4|1|BA|A|1292
5AJ4|1|BA|G|1293
5AJ4|1|BA|U|1294
5AJ4|1|BA|U|1295
5AJ4|1|BA|C|1296
5AJ4|1|BA|C|1297
5AJ4|1|BA|U|1298
5AJ4|1|BA|A|1299
5AJ4|1|BA|U|1300

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain AY

P-SITE AND A-SITE TRNA

Chain B9

MITORIBOSOMAL PROTEIN BL36M, MRPL36

Chain Bq

MITORIBOSOMAL PROTEIN ML54, MRPL54