HL_5AJ4_057

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGCAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_057 not in the Motif Atlas

Homologous match to HL_7RQB_063

Geometric discrepancy: 0.1699

The information below is about HL_7RQB_063

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

5AJ4|1|BA|A|1415
5AJ4|1|BA|G|1416
5AJ4|1|BA|C|1417
5AJ4|1|BA|A|1418
5AJ4|1|BA|A|1419
5AJ4|1|BA|U|1420

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain AV

P-SITE AND A-SITE TRNA

Chain BD

MITORIBOSOMAL PROTEIN UL2M, MRPL2