HL_5AJ4_060

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAUGAUUUAAUCUUAACCU

Length

19 nucleotides

Bulged bases

5AJ4|1|BA|U|1519, 5AJ4|1|BA|U|1525

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ4|1|BA|A|1512
5AJ4|1|BA|A|1513
5AJ4|1|BA|U|1514
5AJ4|1|BA|G|1515
5AJ4|1|BA|A|1516
5AJ4|1|BA|U|1517
5AJ4|1|BA|U|1518
5AJ4|1|BA|U|1519
5AJ4|1|BA|A|1520
5AJ4|1|BA|A|1521
5AJ4|1|BA|U|1522
5AJ4|1|BA|C|1523
5AJ4|1|BA|U|1524
5AJ4|1|BA|U|1525
5AJ4|1|BA|A|1526
5AJ4|1|BA|A|1527
5AJ4|1|BA|C|1528
5AJ4|1|BA|C|1529
5AJ4|1|BA|U|1530

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain B9

MITORIBOSOMAL PROTEIN BL36M, MRPL36

Chain BN

MITORIBOSOMAL PROTEIN UL13M, MRPL13

Chain Bp

MITORIBOSOMAL PROTEIN ML53, MRPL53

Chain Bx

MITORIBOSOMAL PROTEIN ML66, MRPS18A