HL_5AJ4_061

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAGAACAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_061 not in the Motif Atlas

Geometric match to HL_7A0S_067

Geometric discrepancy: 0.1501

The information below is about HL_7A0S_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.2

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

5AJ4|1|BA|C|1555
5AJ4|1|BA|U|1556
5AJ4|1|BA|A|1557
5AJ4|1|BA|G|1558
5AJ4|1|BA|A|1559
5AJ4|1|BA|A|1560
5AJ4|1|BA|C|1561
5AJ4|1|BA|A|1562
5AJ4|1|BA|G|1563

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain B5

MITORIBOSOMAL PROTEIN BL32M, MRPL32

Chain BE

MITORIBOSOMAL PROTEIN UL3M, MRPL3

Chain BR

MITORIBOSOMAL PROTEIN BL17M, MRPL17

Chain BT

MITORIBOSOMAL PROTEIN BL19M, MRPL19